There is a problem with your HTML. This is not a problem with the menu.
You have a comment code within another comment code. The first closing code is activated first and so the second one does not close the first one accordingly.
[code:9ewvubua]<!–<div id="footer">
<p>
Berj Corp – Cafe Design Services is powered by
<a href="http://wordpress.org/">WordPress</a> and <a href="http://blog.flyready.com">Minimalist Fever</a> theme. <a href="feed:http://berjcorp.com/feed">Entries (RSS)</a>
and <a href="feed:http://berjcorp.com/comments/feed">Comments (RSS)</a>.
<!– 20 queries. 1.880 seconds. –>
</p>
</div>–>[/code:9ewvubua]
Jason Farmer – I need to see an example page to figure out what your problem may be.